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  5. Cre01.g066917

Cre01.g066917


Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component


Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g066917
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G29910 No alias chlorophyll A/B binding protein 3 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29920 No alias chlorophyll A/B-binding protein 2 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29930 No alias chlorophyll A/B binding protein 1 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05070 No alias photosystem II light harvesting complex gene 2.2 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34420 No alias photosystem II light harvesting complex gene B1B2 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34430 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27690 No alias photosystem II light harvesting complex gene 2.3 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G54270 No alias light-harvesting chlorophyll B-binding protein 3 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.21 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06740.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.21 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.32 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36220V3.1 No alias photosystem II light harvesting complex gene 2.1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36480V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7180V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s116_10V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04788.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05966.1 No alias component LHCb1/2/3 of LHC-II complex 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05967.1 No alias component LHCb1/2/3 of LHC-II complex 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05968.1 No alias component LHCb1/2/3 of LHC-II complex 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05974.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12461.1 No alias component LHCb1/2/3 of LHC-II complex 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 57 223
No external refs found!