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  5. Cre02.g086887

Cre02.g086887


Description : Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana


Gene families : OG_01_0001131 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g086887
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT1G80680 No alias SUPPRESSOR OF AUXIN RESISTANCE 3 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g01050.1 No alias NUP96 scaffold nucleoporin of nuclear pore complex.... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_14191.1 No alias nucleoporin of nuclear pore complex (NUP98) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_14191.2 No alias nucleoporin of nuclear pore complex (NUP98) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR007230 Peptidase_S59 885 1031
IPR021967 Nup96 1747 2103
No external refs found!