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AT1G30350


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0008173 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008173_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G30350
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT4G22080 No alias root hair specific 14 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP HCCA
MF GO:0004311 farnesyltranstransferase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005788 endoplasmic reticulum lumen IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009395 phospholipid catabolic process IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009859 pollen hydration IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0010022 meristem determinacy IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010143 cutin biosynthetic process IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010226 response to lithium ion IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0019953 sexual reproduction IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044703 multi-organism reproductive process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045471 response to ethanol IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048441 petal development IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051704 multi-organism process IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
CC GO:0070505 pollen coat IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080166 stomium development IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 115 286
PLAZA 3.0 Dicots AT1G30350