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  5. Cre02.g143600

Cre02.g143600


Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component


Gene families : OG_01_0001418 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g143600
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_29590V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 514 837
No external refs found!