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  5. Cre04.g213905

Cre04.g213905


No description available


Gene families : OG_01_0001296 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g213905
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT2G16940 No alias Splicing factor, CC1-like 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G09880 No alias Splicing factor, CC1-like 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g19710.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12764.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 452 560
IPR000504 RRM_dom 568 618
IPR000504 RRM_dom 269 336
IPR000504 RRM_dom 159 223
No external refs found!