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  5. Cre09.g415950

Cre09.g415950


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL6 component


Gene families : OG_01_0004248 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g415950
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AT1G05190 No alias Ribosomal protein L6 family 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g03630.1 No alias component psRPL6 of large ribosomal subunit proteome 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_25510V3.1 No alias Ribosomal protein L6 family 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s128_40V3.1 No alias Ribosomal protein L6 family 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03967.1 No alias no annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 36 107
IPR020040 Ribosomal_L6_a/b-dom 115 189
No external refs found!