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  5. AT1G47340

AT1G47340


Description : F-box and associated interaction domains-containing protein


Gene families : OG_01_0000008 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G47340
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AT1G23037 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009957 epidermal cell fate specification IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019948 SUMO activating enzyme activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0035097 histone methyltransferase complex IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0048188 Set1C/COMPASS complex IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR013187 F-box-assoc_dom_typ3 244 365
IPR001810 F-box_dom 36 69
PLAZA 3.0 Dicots AT1G47340