- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPSa component
Gene families : OG_01_0001297 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001297_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre10.g432800 | |
| Cluster | HCCA: Cluster_17 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G72370 | No alias | 40s ribosomal protein SA | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp2g26290.1 | No alias | component RPSa of SSU proteome | 0.19 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c14_15670V3.1 | No alias | 40s ribosomal protein SA | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c14_15700V3.1 | No alias | 40s ribosomal protein SA B | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c14_17310V3.1 | No alias | 40s ribosomal protein SA B | 0.22 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c17_17600V3.1 | No alias | 40s ribosomal protein SA | 0.13 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c1_24120V3.1 | No alias | 40s ribosomal protein SA | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_09507.1 | No alias | component uS2 of SSU proteome | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_09507.2 | No alias | component uS2 of SSU proteome | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001865 | Ribosomal_S2 | 107 | 179 |
| No external refs found! |