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  5. Cre10.g452100

Cre10.g452100


Description : Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY


Gene families : OG_01_0003905 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g452100
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G67740 No alias photosystem II BY 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g12730.1 No alias component PsbY of PS-II complex 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_21280V3.1 No alias photosystem II BY 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_20010V3.1 No alias photosystem II BY 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_24120V3.1 No alias photosystem II BY 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04586.1 No alias component PsbY of PS-II complex 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0030145 manganese ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR009388 PSII_PsbY 365 387
IPR009388 PSII_PsbY 223 254
IPR009388 PSII_PsbY 152 183
IPR009388 PSII_PsbY 294 325
No external refs found!