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  5. Cre10.g461950

Cre10.g461950


Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-5 component


Gene families : OG_01_0004898 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g461950
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G13060 No alias 20S proteasome beta subunit E1 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G26340 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g06230.1 No alias component beta type-5 of 26S proteasome 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_2970V3.1 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04087.1 No alias component beta type-5 of 26S proteasome 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 58 238
No external refs found!