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  5. Cre11.g481550

Cre11.g481550


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIe basal transcription factor complex.alpha subunit


Gene families : OG_01_0001850 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre11.g481550
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT4G20340 No alias Transcription factor TFIIE, alpha subunit 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c27_3010V3.1 No alias Transcription factor TFIIE, alpha subunit 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!