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  5. Cre12.g503400

Cre12.g503400


Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana


Gene families : OG_01_0007292 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g503400
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 10 173
No external refs found!