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  5. Cre14.g618860

Cre14.g618860


Description : Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component


Gene families : OG_01_0005341 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g618860
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AT3G12810 No alias SNF2 domain-containing protein / helicase... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g15670.1 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_13800V3.1 No alias SNF2 domain-containing protein / helicase... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_30220V3.1 No alias SNF2 domain-containing protein / helicase... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR014012 HSA_dom 262 327
IPR000330 SNF2_N 1155 1416
IPR001650 Helicase_C 1858 1967
No external refs found!