Cre16.g652550

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL24 component

Gene families : OG_01_0005405 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005405_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g652550
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AT5G54600	No alias	Translation protein SH3-like family protein	0.2	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g07850.1	No alias	component psRPL24 of large ribosomal subunit proteome	0.24	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_17530V3.1	No alias	Translation protein SH3-like family protein	0.2	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_9200V3.1	No alias	Translation protein SH3-like family protein	0.18	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01056.1	No alias	component uL24c of large ribosomal subunit proteome	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043624	cellular protein complex disassembly	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003256	Ribosomal_L24	105	169
IPR005824	KOW	72	103

External Links

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Cre16.g652550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation