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  5. Cre16.g687301

Cre16.g687301


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1)


Gene families : OG_01_0003611 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g687301
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT3G54280 No alias DNA binding;ATP binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_11220V3.1 No alias DNA binding;ATP binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015298 solute:cation antiporter activity IEP HCCA
MF GO:0015299 solute:proton antiporter activity IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
MF GO:0022853 active ion transmembrane transporter activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 1112 1458
IPR022707 Mot1_central_dom 654 906
IPR001650 Helicase_C 1555 1654
IPR000357 HEAT 1032 1059
No external refs found!