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  5. AT1G53820

AT1G53820


Description : RING/U-box superfamily protein


Gene families : OG_01_0007874 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007874_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53820
Cluster HCCA: Cluster_5


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009820 alkaloid metabolic process IEP HCCA
BP GO:0009821 alkaloid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0018685 alkane 1-monooxygenase activity IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030638 polyketide metabolic process IEP HCCA
BP GO:0030639 polyketide biosynthetic process IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031057 negative regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
BP GO:0035065 regulation of histone acetylation IEP HCCA
BP GO:0035067 negative regulation of histone acetylation IEP HCCA
BP GO:0035337 fatty-acyl-CoA metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048658 anther wall tapetum development IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080110 sporopollenin biosynthetic process IEP HCCA
MF GO:0090439 tetraketide alpha-pyrone synthase activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1901983 regulation of protein acetylation IEP HCCA
BP GO:1901984 negative regulation of protein acetylation IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP HCCA
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 119 162
PLAZA 3.0 Dicots AT1G53820