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  5. Mp1g04920.1

Mp1g04920.1


Description : component RPL13 of LSU proteome component


Gene families : OG_01_0001081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g04920.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT3G49010 No alias breast basic conserved 1 0.51 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G23900 No alias Ribosomal protein L13e family protein 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre14.g630100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_7370V3.1 No alias breast basic conserved 1 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15900V3.1 No alias breast basic conserved 1 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3490V3.1 No alias breast basic conserved 1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_26280V3.1 No alias breast basic conserved 1 0.43 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_21130V3.1 No alias breast basic conserved 1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04606.1 No alias component eL13 of LSU proteome component 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 185
No external refs found!