AT1G56430

Description : nicotianamine synthase 4

Gene families : OG_01_0004332 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004332_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56430
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
AT4G26483	No alias	nicotianamine synthases	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G04950	No alias	nicotianamine synthase 1	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56080	No alias	nicotianamine synthase 2	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_970V3.1	No alias	nicotianamine synthase 2	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
BP	GO:0003008	system process	None	Extended
BP	GO:0003013	circulatory system process	None	Extended
BP	GO:0003018	vascular process in circulatory system	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006576	cellular biogenic amine metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009555	pollen development	IGI	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IGI	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010232	vascular transport	None	Extended
BP	GO:0010233	phloem transport	IGI	Interproscan
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030410	nicotianamine synthase activity	IGI	Interproscan
BP	GO:0030417	nicotianamine metabolic process	None	Extended
BP	GO:0030418	nicotianamine biosynthetic process	IGI	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042401	cellular biogenic amine biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072350	tricarboxylic acid metabolic process	None	Extended
BP	GO:0072351	tricarboxylic acid biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0001944	vasculature development	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006873	cellular ion homeostasis	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0008272	sulfate transport	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008509	anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0009934	regulation of meristem structural organization	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010078	maintenance of root meristem identity	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016143	S-glycoside metabolic process	IEP	HCCA
BP	GO:0016144	S-glycoside biosynthetic process	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0018126	protein hydroxylation	IEP	HCCA
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	HCCA
MF	GO:0019209	kinase activator activity	IEP	HCCA
BP	GO:0019252	starch biosynthetic process	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0030003	cellular cation homeostasis	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0034605	cellular response to heat	IEP	HCCA
BP	GO:0034754	cellular hormone metabolic process	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0055080	cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0070417	cellular response to cold	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0071281	cellular response to iron ion	IEP	HCCA
BP	GO:0071369	cellular response to ethylene stimulus	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0098772	molecular function regulator	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	HCCA
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004298	Nicotian_synth	7	277

External Links

PLAZA 3.0 Dicots	AT1G56430

AT1G56430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation