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AT1G56460


Description : HIT zinc finger ;PAPA-1-like conserved region


Gene families : OG_01_0006194 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G56460
Cluster HCCA: Cluster_203


Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0004105 choline-phosphate cytidylyltransferase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006656 phosphatidylcholine biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007041 lysosomal transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008333 endosome to lysosome transport IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009903 chloroplast avoidance movement IEP HCCA
BP GO:0009904 chloroplast accumulation movement IEP HCCA
MF GO:0009940 amino-terminal vacuolar sorting propeptide binding IEP HCCA
BP GO:0010187 negative regulation of seed germination IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
MF GO:0010209 vacuolar sorting signal binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
CC GO:0030904 retromer complex IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0033612 receptor serine/threonine kinase binding IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046470 phosphatidylcholine metabolic process IEP HCCA
MF GO:0046577 long-chain-alcohol oxidase activity IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055063 sulfate ion homeostasis IEP HCCA
BP GO:0055081 anion homeostasis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
MF GO:0070696 transmembrane receptor protein serine/threonine kinase binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071484 cellular response to light intensity IEP HCCA
BP GO:0071486 cellular response to high light intensity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072505 divalent inorganic anion homeostasis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
InterPro domains Description Start Stop
IPR006880 INO80B_C 367 450
IPR007529 Znf_HIT 467 498
PLAZA 3.0 Dicots AT1G56460