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  5. Mp2g00570.1

Mp2g00570.1


Description : component RPL23a of LSU proteome component


Gene families : OG_01_0001733 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g00570.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT2G39460 No alias ribosomal protein L23AA 0.46 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G55280 No alias ribosomal protein L23AB 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.38 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15920V3.1 No alias ribosomal protein L23AB 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.43 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04351.1 No alias component uL23 of LSU proteome component 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 19 67
IPR013025 Ribosomal_L25/23 78 138
No external refs found!