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  5. Mp2g08680.1

Mp2g08680.1


Description : component RPS23 of SSU proteome


Gene families : OG_01_0001602 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g08680.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT3G09680 No alias Ribosomal protein S12/S23 family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.54 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_11070V3.1 No alias Ribosomal protein S12/S23 family protein 0.32 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_25120V3.1 No alias Ribosomal protein S12/S23 family protein 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_24130V3.1 No alias Ribosomal protein S12/S23 family protein 0.42 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_3120V3.1 No alias Ribosomal protein S12/S23 family protein 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_14200V3.1 No alias Ribosomal protein S12/S23 family protein 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05942.1 No alias component uS12 of SSU proteome 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 31 141
No external refs found!