Mp2g18820.1

Description : tryptophan-tRNA ligase

Gene families : OG_01_0006261 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006261_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp2g18820.1
Cluster	HCCA: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AT2G25840	No alias	Nucleotidylyl transferase superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre05.g238322	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_12220V3.1	No alias	Nucleotidylyl transferase superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_02343.1	No alias	tryptophan-tRNA ligase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	HCCA
MF	GO:0004820	glycine-tRNA ligase activity	IEP	HCCA
MF	GO:0004832	valine-tRNA ligase activity	IEP	HCCA
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035596	methylthiotransferase activity	IEP	HCCA
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	HCCA
MF	GO:0050497	alkylthioltransferase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
BP	GO:0071586	CAAX-box protein processing	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002305	aa-tRNA-synth_Ic	86	376

External Links

No external refs found!

Mp2g18820.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation