AT1G62360

Description : KNOX/ELK homeobox transcription factor

Gene families : OG_01_0000355 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000355_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62360
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AT5G25220	No alias	KNOTTED1-like homeobox gene 3	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_5610V3.1	No alias	No annotation	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_26440V3.1	No alias	KNOTTED1-like homeobox gene 3	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_1550V3.1	No alias	KNOTTED1-like homeobox gene 3	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009690	cytokinin metabolic process	None	Extended
BP	GO:0009691	cytokinin biosynthetic process	TAS	Interproscan
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009886	post-embryonic animal morphogenesis	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009934	regulation of meristem structural organization	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010093	specification of floral organ identity	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0019827	stem cell population maintenance	TAS	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034754	cellular hormone metabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048438	floral whorl development	RCA	Interproscan
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048440	carpel development	IMP	Interproscan
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048513	animal organ development	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0000210	NAD+ diphosphatase activity	IEP	HCCA
BP	GO:0002215	defense response to nematode	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003988	acetyl-CoA C-acyltransferase activity	IEP	HCCA
MF	GO:0004301	epoxide hydrolase activity	IEP	HCCA
MF	GO:0004506	squalene monooxygenase activity	IEP	HCCA
MF	GO:0004551	nucleotide diphosphatase activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
MF	GO:0004829	threonine-tRNA ligase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
CC	GO:0005955	calcineurin complex	IEP	HCCA
CC	GO:0005963	magnesium-dependent protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005986	sucrose biosynthetic process	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006195	purine nucleotide catabolic process	IEP	HCCA
BP	GO:0006333	chromatin assembly or disassembly	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006971	hypotonic response	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	IEP	HCCA
BP	GO:0009154	purine ribonucleotide catabolic process	IEP	HCCA
BP	GO:0009166	nucleotide catabolic process	IEP	HCCA
BP	GO:0009261	ribonucleotide catabolic process	IEP	HCCA
BP	GO:0009299	mRNA transcription	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
BP	GO:0009413	response to flooding	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009503	thylakoid light-harvesting complex	IEP	HCCA
CC	GO:0009517	PSII associated light-harvesting complex II	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009819	drought recovery	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010076	maintenance of floral meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010117	photoprotection	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010254	nectary development	IEP	HCCA
MF	GO:0010333	terpene synthase activity	IEP	HCCA
MF	GO:0010334	sesquiterpene synthase activity	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010466	negative regulation of peptidase activity	IEP	HCCA
BP	GO:0010555	response to mannitol	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
MF	GO:0010945	CoA pyrophosphatase activity	IEP	HCCA
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	HCCA
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015675	nickel cation transport	IEP	HCCA
BP	GO:0015936	coenzyme A metabolic process	IEP	HCCA
BP	GO:0015937	coenzyme A biosynthetic process	IEP	HCCA
CC	GO:0016021	integral component of membrane	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016122	xanthophyll metabolic process	IEP	HCCA
MF	GO:0016157	sucrose synthase activity	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016408	C-acyltransferase activity	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016794	diphosphoric monoester hydrolase activity	IEP	HCCA
MF	GO:0016801	hydrolase activity, acting on ether bonds	IEP	HCCA
MF	GO:0016803	ether hydrolase activity	IEP	HCCA
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019605	butyrate metabolic process	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	HCCA
BP	GO:0030007	cellular potassium ion homeostasis	IEP	HCCA
BP	GO:0030162	regulation of proteolysis	IEP	HCCA
MF	GO:0030744	luteolin O-methyltransferase activity	IEP	HCCA
MF	GO:0030755	quercetin 3-O-methyltransferase activity	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
CC	GO:0031350	intrinsic component of plastid membrane	IEP	HCCA
CC	GO:0031351	integral component of plastid membrane	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0032928	regulation of superoxide anion generation	IEP	HCCA
MF	GO:0033799	myricetin 3'-O-methyltransferase activity	IEP	HCCA
BP	GO:0033869	nucleoside bisphosphate catabolic process	IEP	HCCA
MF	GO:0034002	(R)-limonene synthase activity	IEP	HCCA
BP	GO:0034031	ribonucleoside bisphosphate catabolic process	IEP	HCCA
BP	GO:0034034	purine nucleoside bisphosphate catabolic process	IEP	HCCA
MF	GO:0034768	(E)-beta-ocimene synthase activity	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0042539	hypotonic salinity response	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043692	monoterpene metabolic process	IEP	HCCA
BP	GO:0043693	monoterpene biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045165	cell fate commitment	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0045861	negative regulation of proteolysis	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0047209	coniferyl-alcohol glucosyltransferase activity	IEP	HCCA
MF	GO:0047760	butyrate-CoA ligase activity	IEP	HCCA
MF	GO:0047763	caffeate O-methyltransferase activity	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048479	style development	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
MF	GO:0050550	pinene synthase activity	IEP	HCCA
MF	GO:0050551	myrcene synthase activity	IEP	HCCA
MF	GO:0050552	(4S)-limonene synthase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
BP	GO:0051552	flavone metabolic process	IEP	HCCA
BP	GO:0051553	flavone biosynthetic process	IEP	HCCA
BP	GO:0051554	flavonol metabolic process	IEP	HCCA
BP	GO:0051555	flavonol biosynthetic process	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051761	sesquiterpene metabolic process	IEP	HCCA
BP	GO:0051762	sesquiterpene biosynthetic process	IEP	HCCA
BP	GO:0052547	regulation of peptidase activity	IEP	HCCA
BP	GO:0052548	regulation of endopeptidase activity	IEP	HCCA
BP	GO:0055075	potassium ion homeostasis	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0071836	nectar secretion	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0072708	response to sorbitol	IEP	HCCA
BP	GO:0080006	internode patterning	IEP	HCCA
MF	GO:0080015	sabinene synthase activity	IEP	HCCA
BP	GO:0080086	stamen filament development	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090322	regulation of superoxide metabolic process	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
MF	GO:0090599	alpha-glucosidase activity	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	HCCA
BP	GO:1902347	response to strigolactone	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:2001293	malonyl-CoA metabolic process	IEP	HCCA
BP	GO:2001294	malonyl-CoA catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005541	KNOX2	174	220
IPR008422	Homeobox_KN_domain	302	341
IPR005540	KNOX1	121	159
IPR005539	ELK_dom	262	283

External Links

PLAZA 3.0 Dicots	AT1G62360

AT1G62360

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation