AT1G62670

Description : rna processing factor 2

Gene families : OG_01_0000231 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62670
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AT1G12700	No alias	ATP binding;nucleic acid binding;helicases	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62590	No alias	pentatricopeptide (PPR) repeat-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62910	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62930	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G63400	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22470	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G26800	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G16640	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000966	RNA 5'-end processing	IMP	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	184	233
IPR002885	Pentatricopeptide_repeat	464	513
IPR002885	Pentatricopeptide_repeat	324	372
IPR002885	Pentatricopeptide_repeat	254	303
IPR002885	Pentatricopeptide_repeat	394	441
IPR002885	Pentatricopeptide_repeat	534	580
IPR002885	Pentatricopeptide_repeat	80	128
IPR002885	Pentatricopeptide_repeat	146	177

External Links

PLAZA 3.0 Dicots	AT1G62670

AT1G62670

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation