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AT1G63130


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000231 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63130
Cluster HCCA: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
AT1G62590 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G16640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006264 mitochondrial DNA replication IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010540 basipetal auxin transport IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0033258 plastid DNA metabolic process IEP HCCA
BP GO:0033259 plastid DNA replication IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 79 128
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 184 233
IPR002885 Pentatricopeptide_repeat 394 441
IPR002885 Pentatricopeptide_repeat 534 581
IPR002885 Pentatricopeptide_repeat 254 303
IPR002885 Pentatricopeptide_repeat 472 513
IPR002885 Pentatricopeptide_repeat 146 178
PLAZA 3.0 Dicots AT1G63130