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  5. Mp4g02780.1

Mp4g02780.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana (sp|f4jrj6|deah9_arath : 830.0)


Gene families : OG_01_0000573 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g02780.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT2G47250 No alias RNA helicase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62310 No alias RNA helicase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre07.g329150 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_70V3.1 No alias RNA helicase family protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 458 531
IPR011709 DUF1605 606 682
IPR001650 Helicase_C 269 395
No external refs found!