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  5. Mp4g06020.1

Mp4g06020.1


Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer


Gene families : OG_01_0000042 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g06020.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT1G67090 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g120150 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15800V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15980V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_22730V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_12530V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08256.1 No alias "small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15633.1 No alias "small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004427 inorganic diphosphatase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 143 251
No external refs found!