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  5. Mp5g15970.1

Mp5g15970.1


Description : component RPS2 of SSU proteome


Gene families : OG_01_0001332 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g15970.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT2G41840 No alias Ribosomal protein S5 family protein 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G57490 No alias Ribosomal protein S5 family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g039250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_18740V3.1 No alias Ribosomal protein S5 family protein 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_8410V3.1 No alias Ribosomal protein S5 family protein 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_5780V3.1 No alias Ribosomal protein S5 family protein 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00770.1 No alias component uS5 of SSU proteome 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 174 245
IPR013810 Ribosomal_S5_N 91 155
No external refs found!