Description : component RPS3a of SSU proteome
Gene families : OG_01_0000966 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000966_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp6g02810.1 | |
Cluster | HCCA: Cluster_141 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G04840 | No alias | Ribosomal protein S3Ae | 0.4 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT4G34670 | No alias | Ribosomal protein S3Ae | 0.34 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Cre13.g568650 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.16 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c11_17260V3.1 | No alias | Ribosomal protein S3Ae | 0.15 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c12_18590V3.1 | No alias | Ribosomal protein S3Ae | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c18_2090V3.1 | No alias | Ribosomal protein S3Ae | 0.36 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c21_21510V3.1 | No alias | Ribosomal protein S3Ae | 0.37 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c22_18300V3.1 | No alias | Ribosomal protein S3Ae | 0.15 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c4_14160V3.1 | No alias | Ribosomal protein S3Ae | 0.23 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Zci_07031.1 | No alias | component eS1 of SSU proteome | 0.22 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
MF | GO:0003924 | GTPase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
MF | GO:0031369 | translation initiation factor binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001593 | Ribosomal_S3Ae | 15 | 221 |
No external refs found! |