AT1G69770


Description : chromomethylase 3


Gene families : OG_01_0003204 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003204_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G69770
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Pp3c6_28720V3.1 No alias chromomethylase 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IMP Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-dependent DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation IMP Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin assembly RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010069 zygote asymmetric cytokinesis in embryo sac IMP Interproscan
BP GO:0010425 DNA methylation on cytosine within a CNG sequence IMP Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
BP GO:0016572 histone phosphorylation RCA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0031048 heterochromatin assembly by small RNA RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0045814 negative regulation of gene expression, epigenetic IGI Interproscan
BP GO:0051567 histone H3-K9 methylation IGI Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003720 telomerase activity IEP HCCA
MF GO:0003721 telomerase RNA reverse transcriptase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004623 phospholipase A2 activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004810 tRNA adenylyltransferase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0004839 ubiquitin activating enzyme activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007004 telomere maintenance via telomerase IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008469 histone-arginine N-methyltransferase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010495 long-distance posttranscriptional gene silencing IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010589 leaf proximal/distal pattern formation IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010833 telomere maintenance via telomere lengthening IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016273 arginine N-methyltransferase activity IEP HCCA
MF GO:0016274 protein-arginine N-methyltransferase activity IEP HCCA
MF GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018195 peptidyl-arginine modification IEP HCCA
BP GO:0018216 peptidyl-arginine methylation IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030619 U1 snRNA binding IEP HCCA
MF GO:0030620 U2 snRNA binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031054 pre-miRNA processing IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034969 histone arginine methylation IEP HCCA
BP GO:0034970 histone H3-R2 methylation IEP HCCA
BP GO:0034971 histone H3-R17 methylation IEP HCCA
BP GO:0034972 histone H3-R26 methylation IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
MF GO:0035198 miRNA binding IEP HCCA
MF GO:0035241 protein-arginine omega-N monomethyltransferase activity IEP HCCA
MF GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity IEP HCCA
BP GO:0035246 peptidyl-arginine N-methylation IEP HCCA
BP GO:0035247 peptidyl-arginine omega-N-methylation IEP HCCA
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048507 meristem development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050000 chromosome localization IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0070628 proteasome binding IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
MF GO:1990817 RNA adenylyltransferase activity IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 383 437
IPR001525 C5_MeTfrase 447 806
IPR001025 BAH_dom 110 225
PLAZA 3.0 Dicots AT1G69770