1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c11_22640V3.1

Pp3c11_22640V3.1


Description : Ribosomal protein S3 family protein


Gene families : OG_01_0001149 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001149_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_22640V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G31610 No alias Ribosomal protein S3 family protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G53870 No alias Ribosomal protein S3 family protein 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35530 No alias Ribosomal protein S3 family protein 0.45 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.43 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04201.1 No alias component uS3 of SSU proteome 0.32 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!