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  5. Pp3c13_14630V3.1

Pp3c13_14630V3.1


Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG_01_0000342 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_14630V3.1
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_25280V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_13900V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_14490V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3970V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13750V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12570V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_2990V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_18826V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_390V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_18830V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24900V3.1 No alias No annotation 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15720V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12701V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 117 317
IPR013103 RVT_2 7 90
IPR006134 DNA-dir_DNA_pol_B_multi_dom 385 700
No external refs found!