1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c13_5200V3.1

Pp3c13_5200V3.1


Description : Ribosomal L29 family protein


Gene families : OG_01_0001104 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_5200V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G39390 No alias Ribosomal L29 family protein 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G09500 No alias Ribosomal L29 family protein 0.37 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G55170 No alias Ribosomal L29 family protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02610 No alias Ribosomal L29 family protein 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.46 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_13720V3.1 No alias Ribosomal L29 family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08404.1 No alias component uL29 of LSU proteome component 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 8 63
No external refs found!