Pp3c13_8060V3.1

Description : SNF7 family protein

Gene families : OG_01_0000836 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000836_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c13_8060V3.1
Cluster	HCCA: Cluster_162

Target	Alias	Description	ECC score	Gene Family Method
AT1G03950	No alias	vacuolar protein sorting-associated protein 2.3	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre04.g213450	No alias	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_6090V3.1	No alias	vacuolar protein sorting-associated protein 2.3	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01819.1	No alias	component VPS2/CHMP2 of ESCRT-III complex	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!