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  5. Pp3c15_25780V3.1

Pp3c15_25780V3.1


Description : Ribosomal protein S6e


Gene families : OG_01_0001326 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c15_25780V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT4G31700 No alias ribosomal protein S6 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G10360 No alias Ribosomal protein S6e 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre09.g400650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g01750.1 No alias component RPS6 of SSU proteome 0.42 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_21120V3.1 No alias Ribosomal protein S6e 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_25430V3.1 No alias Ribosomal protein S6e 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06832.1 No alias component eS6 of SSU proteome 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!