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  5. AT1G07740

AT1G07740


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G07740
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G17670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11690 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP HCCA
MF GO:0000182 rDNA binding IEP HCCA
CC GO:0000930 gamma-tubulin complex IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009432 SOS response IEP HCCA
CC GO:0009898 cytoplasmic side of plasma membrane IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0080084 5S rDNA binding IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 147
IPR002885 Pentatricopeptide_repeat 398 426
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 324 373
IPR002885 Pentatricopeptide_repeat 219 267
IPR002885 Pentatricopeptide_repeat 153 196
PLAZA 3.0 Dicots AT1G07740