Pp3c17_18610V3.1

Description : PIF1 helicase

Gene families : OG_01_0000471 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000471_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c17_18610V3.1
Cluster	HCCA: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
Pp3c14_26730V3.1	No alias	No annotation	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_7910V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_9500V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_17890V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_18590V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_6950V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_35290V3.1	No alias	No annotation	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_19090V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_20060V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s62_90V3.1	No alias	PIF1 helicase	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	1	213

External Links

No external refs found!

Pp3c17_18610V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation