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  5. Pp3c17_2630V3.1

Pp3c17_2630V3.1


Description : CASC3/Barentsz eIF4AIII binding


Gene families : OG_01_0002390 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c17_2630V3.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AT1G80000 No alias CASC3/Barentsz eIF4AIII binding 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_2626V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!