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  5. AT2G03640

AT2G03640


Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain


Gene families : OG_01_0000460 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G03640
Cluster HCCA: Cluster_89


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006913 nucleocytoplasmic transport ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
BP GO:0000209 protein polyubiquitination IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003838 sterol 24-C-methyltransferase activity IEP HCCA
MF GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity IEP HCCA
MF GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity IEP HCCA
MF GO:0003878 ATP citrate synthase activity IEP HCCA
MF GO:0003978 UDP-glucose 4-epimerase activity IEP HCCA
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004075 biotin carboxylase activity IEP HCCA
MF GO:0004485 methylcrotonoyl-CoA carboxylase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004557 alpha-galactosidase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004679 AMP-activated protein kinase activity IEP HCCA
MF GO:0004738 pyruvate dehydrogenase activity IEP HCCA
MF GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity IEP HCCA
MF GO:0004760 serine-pyruvate transaminase activity IEP HCCA
MF GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005354 galactose transmembrane transporter activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006085 acetyl-CoA biosynthetic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
BP GO:0006552 leucine catabolic process IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008169 C-methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008219 cell death IEP HCCA
MF GO:0008453 alanine-glyoxylate transaminase activity IEP HCCA
MF GO:0008470 isovaleryl-CoA dehydrogenase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008824 cyanate hydratase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009063 cellular amino acid catabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009083 branched-chain amino acid catabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009313 oligosaccharide catabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
CC GO:0009346 ATP-independent citrate lyase complex IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009439 cyanate metabolic process IEP HCCA
BP GO:0009440 cyanate catabolic process IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009743 response to carbohydrate IEP HCCA
BP GO:0009744 response to sucrose IEP HCCA
BP GO:0009746 response to hexose IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010078 maintenance of root meristem identity IEP HCCA
BP GO:0010189 vitamin E biosynthetic process IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010236 plastoquinone biosynthetic process IEP HCCA
BP GO:0010268 brassinosteroid homeostasis IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010506 regulation of autophagy IEP HCCA
BP GO:0010508 positive regulation of autophagy IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010623 programmed cell death involved in cell development IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015149 hexose transmembrane transporter activity IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
BP GO:0015908 fatty acid transport IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0015976 carbon utilization IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016420 malonyltransferase activity IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0033530 raffinose metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
BP GO:0034284 response to monosaccharide IEP HCCA
BP GO:0034285 response to disaccharide IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034484 raffinose catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
BP GO:0040020 regulation of meiotic nuclear division IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042360 vitamin E metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0043617 cellular response to sucrose starvation IEP HCCA
BP GO:0044000 movement in host IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0044766 multi-organism transport IEP HCCA
MF GO:0045309 protein phosphorylated amino acid binding IEP HCCA
BP GO:0045739 positive regulation of DNA repair IEP HCCA
BP GO:0045836 positive regulation of meiotic nuclear division IEP HCCA
BP GO:0045892 negative regulation of transcription, DNA-templated IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046369 galactose biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046739 transport of virus in multicellular host IEP HCCA
BP GO:0046740 transport of virus in host, cell to cell IEP HCCA
BP GO:0046794 transport of virus IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048102 autophagic cell death IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048657 anther wall tapetum cell differentiation IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
MF GO:0050281 serine-glyoxylate transaminase activity IEP HCCA
MF GO:0050373 UDP-arabinose 4-epimerase activity IEP HCCA
MF GO:0050736 O-malonyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
MF GO:0051219 phosphoprotein binding IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051446 positive regulation of meiotic cell cycle IEP HCCA
BP GO:0051701 biological process involved in interaction with host IEP HCCA
BP GO:0051785 positive regulation of nuclear division IEP HCCA
BP GO:0052126 movement in host environment IEP HCCA
MF GO:0052692 raffinose alpha-galactosidase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055088 lipid homeostasis IEP HCCA
BP GO:0060147 regulation of posttranscriptional gene silencing IEP HCCA
BP GO:0060964 regulation of gene silencing by miRNA IEP HCCA
BP GO:0060966 regulation of gene silencing by RNA IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070547 L-tyrosine aminotransferase activity IEP HCCA
MF GO:0070878 primary miRNA binding IEP HCCA
MF GO:0070883 pre-miRNA binding IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090342 regulation of cell aging IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902579 multi-organism localization IEP HCCA
BP GO:1902586 multi-organism intercellular transport IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002075 NTF2 15 131
IPR000504 RRM_dom 277 335
PLAZA 3.0 Dicots AT2G03640