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  5. Pp3c17_4860V3.1

Pp3c17_4860V3.1


Description : nuclear RNA polymerase C1


Gene families : OG_01_0002923 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002923_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c17_4860V3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name
  		•  Evidence Source
    MF GO:0003677 DNA binding IEA Interproscan
    MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
    BP GO:0006351 transcription, DNA-templated IEA Interproscan
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0003774 cytoskeletal motor activity IEP HCCA
    MF GO:0003777 microtubule motor activity IEP HCCA
    CC GO:0005634 nucleus IEP HCCA
    CC GO:0005730 nucleolus IEP HCCA
    BP GO:0006397 mRNA processing IEP HCCA
    MF GO:0008017 microtubule binding IEP HCCA
    MF GO:0008092 cytoskeletal protein binding IEP HCCA
    MF GO:0008134 transcription factor binding IEP HCCA
    MF GO:0015631 tubulin binding IEP HCCA
    BP GO:0016071 mRNA metabolic process IEP HCCA
    CC GO:0043226 organelle IEP HCCA
    CC GO:0043227 membrane-bounded organelle IEP HCCA
    CC GO:0043229 intracellular organelle IEP HCCA
    CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
    InterPro domains Description Start Stop
    IPR007083 RNA_pol_Rpb1_4 753 857
    IPR007080 RNA_pol_Rpb1_1 43 381
    IPR000722 RNA_pol_asu 383 549
    IPR007066 RNA_pol_Rpb1_3 552 726
    IPR007081 RNA_pol_Rpb1_5 864 1342
    No external refs found!