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  5. AT2G03870

AT2G03870


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG_01_0004769 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G03870
Cluster HCCA: Cluster_160


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0001676 long-chain fatty acid metabolic process IEP HCCA
BP GO:0002213 defense response to insect IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0007292 female gamete generation IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
CC GO:0009504 cell plate IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010078 maintenance of root meristem identity IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010311 lateral root formation IEP HCCA
BP GO:0010450 inflorescence meristem growth IEP HCCA
BP GO:0010501 RNA secondary structure unwinding IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 histone phosphorylation IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0035101 FACT complex IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048232 male gamete generation IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048448 stamen morphogenesis IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048829 root cap development IEP HCCA
BP GO:0048832 specification of plant organ number IEP HCCA
BP GO:0048833 specification of floral organ number IEP HCCA
BP GO:0051211 anisotropic cell growth IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060968 obsolete regulation of gene silencing IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080129 proteasome core complex assembly IEP HCCA
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 10 82
PLAZA 3.0 Dicots AT2G03870