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  5. Pp3c18_20990V3.1

Pp3c18_20990V3.1


Description : small RNA degrading nuclease 3


Gene families : OG_01_0002711 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_20990V3.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT5G05540 No alias small RNA degrading nuclease 2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g036600 No alias Small RNA degrading nuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g15620.1 No alias miRNA nuclease (SDN1) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 170 312
No external refs found!