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  5. Pp3c1_120V3.1

Pp3c1_120V3.1


Description : Ribosomal L22e protein family


Gene families : OG_01_0000811 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_120V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G05560 No alias Ribosomal L22e protein family 0.45 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27770 No alias Ribosomal L22e protein family 0.38 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre07.g357850 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.42 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g02920.1 No alias component RPL22 of LSU proteome component 0.48 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_680V3.1 No alias Ribosomal L22e protein family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_17710V3.1 No alias Ribosomal L22e protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_5370V3.1 No alias Ribosomal L22e protein family 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_27030V3.1 No alias Ribosomal L22e protein family 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00776.1 No alias component eL22 of LSU proteome component 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 14 123
No external refs found!