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  5. Pp3c1_8290V3.1

Pp3c1_8290V3.1


Description : Ribosomal protein S4 (RPS4A) family protein


Gene families : OG_01_0000807 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_8290V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.35 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.55 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.37 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.42 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g03290.1 No alias component RPS4 of SSU proteome 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_3736V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01016.1 No alias component eS4 of SSU proteome 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 43 90
IPR032277 40S_S4_C 212 257
IPR005824 KOW 178 210
IPR013845 Ribosomal_S4e_central_region 95 169
IPR013843 Ribosomal_S4e_N 3 38
No external refs found!