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  5. Pp3c20_23240V3.1

Pp3c20_23240V3.1


Description : photosystem I light harvesting complex gene 2


Gene families : OG_01_0000685 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c20_23240V3.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT1G19150 No alias photosystem I light harvesting complex gene 6 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G61470 No alias photosystem I light harvesting complex gene 2 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G28450 No alias Chlorophyll A-B binding family protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13084.1 No alias component LHCa2 of LHC-I complex 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 74 241
No external refs found!