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  5. Pp3c23_5290V3.1

Pp3c23_5290V3.1


Description : RNA helicase family protein


Gene families : OG_01_0005915 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c23_5290V3.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT5G13010 No alias RNA helicase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g03460.1 No alias RNA helicase (Prp16) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05123.1 No alias RNA helicase (Prp16) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!