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  5. Pp3c2_10060V3.1

Pp3c2_10060V3.1


Description : Ribosomal protein S19e family protein


Gene families : OG_01_0001363 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001363_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_10060V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G02080 No alias Ribosomal protein S19e family protein 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15520 No alias Ribosomal protein S19e family protein 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61170 No alias Ribosomal protein S19e family protein 0.51 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g106600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.43 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.34 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_19640V3.1 No alias Ribosomal protein S19e family protein 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c27_2780V3.1 No alias Ribosomal protein S19e family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_02763.1 No alias component eS19 of SSU proteome 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 35 169
No external refs found!