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  5. Pp3c2_20550V3.1

Pp3c2_20550V3.1


Description : Ribosomal protein L13 family protein


Gene families : OG_01_0000753 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Pp3c2_20550V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G07110 No alias Ribosomal protein L13 family protein 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G24830 No alias Ribosomal protein L13 family protein 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13170 No alias Ribosomal protein L13 family protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G48760 No alias Ribosomal protein L13 family protein 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.3 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_14062.1 No alias component uL13 of LSU proteome component 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 13 120
No external refs found!