AT2G21660


Description : cold, circadian rhythm, and rna binding 2


Gene families : OG_01_0000078 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G21660
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Pp3c4_6610V3.1 No alias glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000380 alternative mRNA splicing, via spliceosome IMP Interproscan
MF GO:0003690 double-stranded DNA binding IDA Interproscan
MF GO:0003697 single-stranded DNA binding IDA Interproscan
MF GO:0003723 RNA binding IDA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006094 gluconeogenesis RCA Interproscan
BP GO:0006096 glycolytic process RCA Interproscan
BP GO:0006406 mRNA export from nucleus IMP Interproscan
BP GO:0006833 water transport RCA Interproscan
BP GO:0006970 response to osmotic stress IMP Interproscan
BP GO:0006972 hyperosmotic response RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
BP GO:0007623 circadian rhythm IEP Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
BP GO:0007623 circadian rhythm TAS Interproscan
BP GO:0009266 response to temperature stimulus RCA Interproscan
BP GO:0009409 response to cold IGI Interproscan
BP GO:0009409 response to cold IEP Interproscan
BP GO:0009414 response to water deprivation IEP Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009651 response to salt stress IEP Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
BP GO:0010043 response to zinc ion IEP Interproscan
BP GO:0010119 regulation of stomatal movement IMP Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010501 RNA secondary structure unwinding IDA Interproscan
BP GO:0032508 DNA duplex unwinding IDA Interproscan
BP GO:0045087 innate immune response IDA Interproscan
BP GO:0045087 innate immune response IMP Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
BP GO:0046686 response to cadmium ion RCA Interproscan
CC GO:0048046 apoplast IDA Interproscan
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
CC GO:0000785 chromatin IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009649 entrainment of circadian clock IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032269 negative regulation of cellular protein metabolic process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 11 79
PLAZA 3.0 Dicots AT2G21660