Pp3c2_3220V3.1

Description : Clathrin, heavy chain

Gene families : OG_01_0004156 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004156_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c2_3220V3.1
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AT3G11130	No alias	Clathrin, heavy chain	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g101400	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g19660.1	No alias	heavy chain of clathrin triskelion	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09422.1	No alias	heavy chain of clathrin triskelion	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
BP	GO:0034622	cellular protein-containing complex assembly	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015348	Clathrin_H-chain_linker_core	344	365
IPR022365	Clathrin_H-chain_propeller_rpt	155	197
IPR000547	Clathrin_H-chain/VPS_repeat	1288	1431
IPR000547	Clathrin_H-chain/VPS_repeat	850	982
IPR000547	Clathrin_H-chain/VPS_repeat	701	840
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR000547	Clathrin_H-chain/VPS_repeat	557	690
IPR000547	Clathrin_H-chain/VPS_repeat	1143	1281
IPR000547	Clathrin_H-chain/VPS_repeat	993	1131

External Links

No external refs found!